-
I am getting the above error even though the region is present in my data. What could be wrong?
```bash
./LDBlockShow-1.40/bin/LDBlockShow -InVCF haplotype_gene_quantification/g3_variants/haptags_…
-
https://vrs.ga4gh.org/en/latest/terms_and_model.html#haplotype
-
Low priority, but we should start thinking about this. learners/reference.md is a place to put a glossary. Then I think that we can link to the file somehow in our lesson.
-
Hi,
I have been using RFmix for a while and it works really well. Just a quick question, in the output file, we will have samplename.1 and samplename.2 for haplotypes at one site. How does the resu…
-
Hi,
I am working with HIFI+HiC haplotype resolved assembly with HIFIasm (both have been also scaffolded with HiC data). Based on BUSCO and Merqury results, assemblies contain ~%3-4 duplication. I w…
-
Currently, repeatmasker_wrapper has
```
Cores Allocated 16
Memory Allocated (MB) 59392
```
A single chromosome works but a whole VGP haplotype fails OOM.
Currently trying to get a RAM grap…
-
Hi @dfguan,
Thanks for the excellent tool.
I am trying to scaffold two separate phased haplotype assemblies of the same diploid plant genome (assembled with HIFIasm). Since I am using the same …
-
Hello Dr. Rannala,
Is there any reason I should not use the haplotypes of RADseq loci in BA3SNP as long as I filter for
-
command：hisat-3n-build -p 12 --snp hg38_snp141.snp --haplotype hg38_snp141.haplotype --exon gencode.v46.exon.txt --ss gencode.v46.splice_sites.txt --3N hg38.fa /home/yaoyf/reference/hisat3n_index/hg38…
-
### Description of feature
**feature requirement**
Phasing assessment is required for phased assemblies. A heatmap generated from combined haps can assist with this checking. This is required for re…