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Hello,
I'm Sebastian, working on my MSc thesis, aiming to create a knowledge graph of the wastewater treatment microbiome. We're using Netcomi for constructing Microbial Association Networks (MANs)…
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Hi,
I am quite new to the field of metagenomic sequencing and we are starting a new project in our lab and want to use your pipeline to determine if some sub-strains emerge or abolish over time. Or…
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For my project I will be focusing on short read data (illumina sequencing) to assemble the genome for the mushroom _Lactarius indigo_. This mushroom species has a very striking blue color due to it's …
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editor preferred term: Clone-seq
textual definition: A massively-parallel site-directed mutagenesis approach leveraging next-generation sequencing to rapidly and cost-effectively generate a large num…
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**New term details**
```
Term name - sequencing technology used
Structured comment name - seq_method
Definition - The sequencing method used; e.g. Sanger, pyrosequencing, ABI-solid
Expected value…
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Hi.
I am thinking about obtaining my next sequences through DNBseq (https://en.mgi-tech.com/products/instruments_info/5/) instead Illumina. As far as I can see in the NovoPlasty configuration files…
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I have been looking at this paper using miniBarcode:
Srivathsan *et al.* (2019) Rapid, large-scale species discovery in hyperdiverse taxa using 1D MinION sequencing
https://doi.org/10.1186/s12915-…
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editor preferred term: Illumina NextSeq 500
alternative terms: NextSeq 500
textual definition: Desktop sequencing system to analyze whole genomes, exomes, and transcriptome.
definition source for t…
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### Discussed in https://github.com/wwood/CoverM/discussions/120
Originally posted by **kevinmyers** June 28, 2022
I have a set of 217 MAGs that I would like to use coverM to determine the ove…
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My problem is that I am having difficulty obtaining a list of variants using bcftools mpileup and bcftools call with PacBio data. I do not have this problem with data of Illumina paired-end sequencing…