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Hi all,
I am trying to install metAMOS on CentOS 6.5, after installing all the program and dependencies guide suggesting to check if the program is installed well. To do that, i was asked to run run_…
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### Description of the bug
I’ve been testing ampliseq on some Element Biosciences data using standard Illumina settings and discovered an interesting issue where DADA2_ERR fails with error that looks…
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In #2043 the service response was modified to keep individual protocols separated as list items inside the `protocols` inner-entity, and each list item only contains the protocol fields related to eac…
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A user is having an issue when their file paths have spaces in an arguments file. This issue does not exist when there is no arguments file. It would be helpful for GATK to be able to parse shell quot…
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Hi,
I found a description in the tutorial:
"Our standard pipeline is to perform single-index 25x25 PE Illumina sequencing on up to 90 pooled samples on a single HiSeq 2500 flowcell, where each sampl…
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**Is your feature request related to a problem? Please describe.**
When trying to analyze nanopore sequencing data with CRISPResso2, the runs fails due to insufficient memory. I believe this is arisi…
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Hi,
Is VTAM, like DADA2, dependend on the sequencing technique used and thus limited to Illumina sequencing? Or can it also be used for ONT sequencing data? I can't find it in the article, although…
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We use merged platform because adding RNA-Seq data require that the same platform is used for all the samples. This is unnecessary because ultimately these platforms get replaced by a generic expressi…
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editor preferred term: Illumina HiSeq X Five
alternative terms: HiSeq X Five
textual definition- A DNA sequencer that consists of a set of 5 HiSeq X Sequencing Systems.
definition source for the …
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Hello again!
I want to process the sequencing data obtained by Croce _et al_ in **"Phage display profiling of CDR3β loops enables machine learning predictions of NY-ESO-1 specific TCRs"** with TRUS…