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There is still something funny going on. I have the latest bracken build in ~/build/Bracken and I have the executables as symlinks in ~/bin. They are in the path. For krakenuniq I am using a conda p…
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Hi
I have several assemble, the assembly size were 2.2G, while I have 22G hifi ccs data, I wonder if the data is enough. The busco is 97%. The Kmer distribution seems ok. I wonder if the hifiasm can …
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Dear Marçais,
I'm using Jellyfish to estimate the genome size of a triploid (2n=20 + n=10), below is the kmer distribution:
![图片](https://user-images.githubusercontent.com/29498519/56257078-b3…
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Need summary report and full report for QC.
## Summary report
- General
- ToLID
- Species
- Class
- Order
- Genome Traits
- Haploid Size
- Haploid Number
- Ploidy
- Sample…
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## Initial impressions on MAGinator
### Parameters:
**Downsample size**: 5000
**Refined set size**: 100
### Initial MSE improvement
![image](https://user-images.githubusercontent.com/4901…
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I am paired end assembling a known genome - Salmonella enterica strain LT2 (CP014051.2) ~4.9M in size
I am assembling at 20x,50x,100x,300x and 600x coverage.
The results I am getting are strange…
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Since cluster module needs too much memory. (I have 2 million nucleotide seqs, about 30G, and 1T memory, and segment fault occurred).
I try to use LINCLUST instead. But I also want a better perf…
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Hi,
I'm using wtdbg2 v2.5 on a 3G genome with about 60x PacBio Sequel CLR data and chose `-x preset3` for large genomes. Kmer counting was done in 90 minutes with 60 threads. The overlap stage is r…
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https://github.com/rmcolq/pandora/blob/565c1572f2c535db20c45062d359055d04a7659a/src/localPRG.cpp#L1406-L1407
I've triggered this error and don't really know why/how? Any suggestions on how to get t…
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I had an alignment of 5 large chromosomes that terminated apparently die to writing a file that was too large (1.1 Tb). We are able to write files larger than this on the disks we are using so I want…