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Hi,
I am trying to analyze a dataset that includes 10 single cell experiments and about 66,000 cells. The actual set of cells I'm interested in is a small group of those, of about 7,000 cells. Wit…
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Hi! I'm using MAST to identify sex-biased genes (Differentially Expressed Genes between males and females) in a dataset with both case and control samples.
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zlmCond
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Hi,
I generated gene-activity matrix with function make_gene_matrix, could I please ask if the function snapatac2.tl.diff_test can be used to impute the differentially accessible genes?
Thanks,…
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https://doi.org/10.1101/390153
> A fundamental problem in biomedical research is the low number of observations available, mostly due to a lack of available biosamples, prohibitive costs, or ethica…
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Hi,
Thank you so much for the tool.
Could you give me some pointers on packages/functions to identify/visualize the co-expression (correlations) between markers or of one marker with every other m…
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Hi,
Thank you for developing this helpful package! I am currently trying to optimize the number of clusters for a cell population using your package, but I've encountered an error that I'm having tro…
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In the Li 2018, [Cell](10.1016/j.cell.2018.11.043) publication they find a continuum between cytotoxic cells and cell expression exhaustion markers. They also show that cells expression markers of wha…
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Hi, when I was using cellassign, this error occurred. I can confirm that the number and order of genes in my matrix and marker are consistent.
```
Error in cellassign(exprs_obj = sce, marker_gene_…
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Hello, Mr. Tang
I want to perform collinearity analysis based on the mummer result coords file, in my opinion, this requires converting the coords file to a blast file, but I didn't convert it succes…
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Hi,
Thank you very much for your meaningful work.
I am a student from sun yet-san university. Recently, I have been doing some work about bivalent genes during the development process. I am…