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Hi, thanks in advance.
I have obtained multiple viral sequences identified by several tools, including vibrant. Now, i want to find AMGs. But it seems that vibrant could only annotate sequences ident…
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Dear all,
i have an rna-seq (PE, ss, rRNA removed) from a moss species (no genome available). I run Kraken2 (default options) with plusPFP DB (containing some moss genomes), and what confuses me th…
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Hello, database docs said:
> The signatures were calculated with a scaled of 1000, which robustly supports searches for ~10kb or larger matches.
>
I want to know how "~10kb" were estimated, and d…
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Hi,
Recently, I have get the access to dataset EGAD00001007718 from EGA, however all the data are cram format. If I want to covert the data to bam format, the reference genome is necessary for…
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Hi! I have been using Kaiju for a while, and now I am interested in filtering fungal reads. For this, I used the Kaiju app in KBase and compared the results using two different databases: NCBI BLAST n…
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I've been running vRhyme on some of my test data [SRR11140750-test.zip](https://github.com/AnantharamanLab/vRhyme/files/13515750/SRR11140750-test.zip) and vRhyme doesn't generate any output bins (alon…
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I am trying to use homopolish to improve the assembly consensus after using Raven for assembly and Medaka for primary polishing. However, when I use the virus.msh file and input my consensus.fasta fil…
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Hello,
I am currently struggling with metagenomes obtained from environmental biofilms (river rocks). I have 50 metagenomes but I obtain only 100 checkV high-quality viruses. I would expect a lot m…
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Hello professor Simon A. Babayan:
Im a student of University of Chinese Academy of Sciences, I have trouble when predicting RNA virus host by using the method developed by
Babayan, S. A., Or…
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Hi Dr.Camargo:
I find this nice project when I read your IMG/VR v4 manuscripts published on Nucleic Acids Research. I have some doubts about this and hope you can help me about them.
1.I tried this…