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This is a requested feature for the taxon assignment phase of the autometa pipeline (Thanks @tderond for bringing this to my attention).
This would involve outputting an additional column or colum…
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Hello,
I built Diamond database using;
`diamond makedb --in nr.gz \
–db nr_diamond
–taxonmap prot.accession2taxid.FULL
–taxonnodes nodes.dmp
–taxonnames names.dmp
–threads 72`
and run diam…
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We noticed that the functionality provided by the removed of `items:` property does not actually get replaced by the `uniqueItems` and `uniqueEntries` fields.
- `items:` allowed for a single 'colum…
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It appeared in the result of running ktImportBLAST.
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The WIMP workflow adds an additional group Analyses/Classification_000 - this stores the taxonomic profile information. Add support to extract via poretools.
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Note also Ben's lunchtime verbal comment of cutting down magicblast-against-"bacteria" [or other large db] to look only at representative bacterial genomes (instead of all) as a coarse-grained option.…
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Hello, I am facing this error while running class2tree
**> sp_worms_id**
[1] 138474 138677 104108 494795 138710 125332 130722 144784 129686 231858 369350 124208 127031 133913 273…
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This is one component of #375
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# 本地化nr数据库 - SR-C
数据库下载 nr数据库下载前应确认其序列ID中包含有gi信息。推荐通过NCBI提供的脚本进行下载。 1 perl update_blastdb.pl nr 下载完成后解压 1 tar -zxvf *.tar.gz 建库 由于下载的
[https://sr-c.github.io/2018/10/02/local-nr-database/](https://s…
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Hi there!
What does it mean if my report file is empty, but I have a lot of classification results (redirected with `-S` flag)? This is how I have run the command:
```
centrifuge -q -t --met…