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At the moment we have file existence tests instead of proper dependency management
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When following the instructions on https://github.com/GoogleCloudPlatform/functions-framework-cpp/blob/main/examples/site/howto_deploy_to_cloud_run/README.md , I consistently get errors-
```
[builde…
instw updated
1 month ago
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I'm getting the following error:
`/apps/gent/RHEL8/zen2-ib/software/MaSuRCA/4.1.0-GCC-11.3.0/bin/chromosome_scaffolder.sh: line 227: let: AUTO_REP_COV_THRESH=: syntax error: operand expected (error…
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Hi! First of all, thank you for making a fantastic tool!
Second, after working exclusively with the embedding outputs for a while I've started playing around with the translation feature of ProstT5…
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Hi, I was wondering if the gtdb reps 220 had been sketched (or is about to be)? Otherwise, would it be possible to provide/point to the command you use to do it? I imagine it's fairly straightforward,…
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Hello,
I am getting an empty CDS file from running gff2seq with no error message.
My command is `anchorwave gff2seq -i GCF_003119195.2_ASM311919v2_genomic.gff -r GCF_003119195.2_ASM311919v2_genom…
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**Describe the bug**
I am encountering an error when downloading genome summary for the 2975324 taxid
**Version**
```sh
$ datasets version
datasets version: 16.27.1
```
**To Reproduce**
`…
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As in title. E.g. `GCF_001721125.1` should be `GCF_001721125.1_ASM172112v1`.
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```
(base) -bash-4.2$ ncbi-genome-download -s refseq -A missing_references.list -o reference_genomes -p 4 bacteria
ERROR: No downloads matched your filter. Please check your options.
```
Here's …
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When running the standard build command "kraken2-build --standard --db $DB_NAME" , I keep getting this error:
rsync_from_ncbi.pl: unexpected FTP path (new server?) for https://ftp.ncbi.nlm.nih.gov/ge…