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### 📜 Description
Unable to get key information
### 👟 Reproduction steps
> This is the code I'm trying: {% if key %} In the key of {{ key }}.{% endif %}
> I've also tried using just {{ key }} with…
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Dear Platypus team,
Thank you for developing this amazing package and the analyses available for TCR data are fabulous!
Can I ask a question about VDJ_call_MIXCR?
I got this error when runni…
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Hello,
I have a vgm matrix that includes 19 samples. Some questions pertaining to the VDJ_VJ_usage_circos function.
-When I run the VDJ_VJ_usage_circos function, only 18 samples are being proc…
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### Source Name
The Network Data Exchange (NDEx)
### Source URL
https://www.ndexbio.org/index.html#/
### Source Description
The NDEx Project provides an open-source framework where scie…
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Hello Trust4 Team,
Thank you for developing such a useful tool.
I’ve encountered an issue and don’t know how to deal with it.
I have 8 bulk RNA-seq samples, and their FASTQ files are approximate…
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Here is my code and the bug:
$ ./run-trust4 -b all_contig.bam -f all_contig.fasta -o TRUST_all_contig_toassemble --ref mm39.fa --barcode CB -t 4
[Tue Mar 12 11:32:23 2024] TRUST4 begins.
[Tue M…
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Ideally the test suite would finish in less than a minute. Right now it's > 5 minutes:
```r
==> devtools::test()
ℹ Testing djvdj
✔ | F W S OK | Context
✔ | 122 | calc-diversity [6.0s] …
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Hi,
in your tutorial notebook, you use
`fns_covar = ["vdj_v1_hs_aggregated_donor1_binarized_matrix_extended_covariates.csv",
"vdj_v1_hs_aggregated_donor2_binarized_matrix_extended_co…
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I filed a TACC ticket (Ticket #43327) as I don't know if this is a launcher bug, or just an issue with TACC's current version of launcher.
> I'm using launcher module to run multiple processes acro…
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By comparing FR4Begin of human TRBJ2-7*01 and TRBJ2-7*02, TRJBJ2-7*02 should be changed from 20 to 19. As a consequence, mixCR will produce a consensus VDJ sequence missing the bp "G" and wrong FR4 tr…