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hi,
I download the vOTU.fna (There are 5251 vOTUs in there.)data in the text and used the MGV pipeline(https://github.com/snayfach/MGV/tree/master/viral_detection_pipeline), like this
````
cond…
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hi jiarong et al,
thanks for your nice code.
I'm trying use virsorter2 to find some RNA virus from meta-transcriptome data, there are three output file I got, (final_vira_score.tsv; final_viral_comb…
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### Description of bug
Hello,
I recently ran metaviralSPAdes on a set of general environmental samples without targeted viral enrichment, and I noticed that the number of contigs generated is sign…
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Construct databases using the same refseq data as the `kraken2` database which includes
- complete genome, chromosome, scaffold and contigs
- Archaea, Bacteria, viral, protozoa, fungi, plasmid…
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Hi Katelyn,
thanks for PHANOTATE, great tool!
I'm using it for larger sets of viral contigs, and noticed that it seems to not free up RAM between contigs. On my current set with 100+ sequence, t…
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Dear Developer,
Thank you so much for Kaiju.
I performed spade assembly (for the virus) and performed kaiju on assembled contigs. For the reference database, I downloaded the viral database from …
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Hi,
Thanks for the excellent tool! I have identified viral contigs from all samples and compiled them. Then, how to prepare coverage_values.tsv file? Can coverM [https://github.com/wwood/CoverM](ur…
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Thank you so much for Prof. Roux to provide this script for the clustering of the novel viral sequences!
I have two questions that I sincerely want to be answered:
1. I want to make sure whether thi…
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>When you ran `DRAM-v.py` did you provide the VIRSorter affi contigs tab file? Or did you not provide anything for the `-v` flag? If you didn't provide that then you will not be able to distill with D…
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Dear jiarong,
I'm using virsoter 2.2.1 and stucked in an error when running virsorter. The error occur after Step 2 - extract-feature finished. The linux command is:
`virsorter run -w vs2_out -i …