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`abyss-pe` is finished. I get this log file:
```
Best scaffold N50 is 3620 at n=5 s=1000.
n n:1000 L50 LG50 NG50 min N75 N50 N25 E-size max sum name
51.44e6 164446 41828 164446 1000 1000 2262 …
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Hi,
I'm implementing Trans-ABySS in an SLURM HPC system,
when I call the CMD in the master node the script calls abyss-pe, but for some reason when I call the CMD in some other node is calling ABY…
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Hi,
Imagine having a unitig with sequence `TCGAAATCAGT` (reverse complement: `ACTGATTTCGA`).
When doing `ccdbg.find(Kmer("ACTGA"))` (k=5), you'll get a `UnitigMapping` with `um.dist = 6` and `um…
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Hi,
I just wanted to show a comparison using simulated PacBio CLR reads corrected with Illumina reads versus simulated HiFi reads for a Drosophila melanogaster genome assembly (haploid assembly "co…
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Hi again,
sorry to only be leaving 'negative' issues, but my dashing run has been going on for a day (2 threads) so I suppose I did something wrong when following the README instructions.
I have 15k…
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I'm experiencing an issue that appears to be similar to #1726. I am willing to upload any files as described in the FAQ if desired.
I am running on a cluster under SLURM control running RHEL 7. I a…
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Hi,
I tried to run an SH-assembly on public dataset SRR3191692 and got:
`Segmentation fault (core dumped)`
with no further output when calling `CQF-deNoise`.
I called it with the following param…
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I have got a draft genome from 30x PacBio for about 4 Gbp plant genome. I would like to use 60x 10xGenomics linked reads for correcting. I have got 4 library from 10xGenomics. I tried tigmint with dry…
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Dear RuanJue,
I noticed in the end of wtclp step there is an estimation of genome size, e.g. in this case 1.0GBp (shown below), which is the size we expect for the genome. However the output from w…
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Dear Jue Ruan,
I've finished the wtdbg2 and the results turned out to be good (judged by total size also N50).
However, I noticed that there are unitigs and contigs, as in the log there are line…