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Thank you for this very useful tool! I have been trying to use MethylDackel to analyze data acquired from a NOMe-seq type method, in which GpC methylation (in addition to CpG methylation) is an inform…
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Hi,
I am coming from [here](https://github.com/huishenlab/sv_calling_docker).
Basically, Delly is one of the tools suggested to identify SVs from WGBS data.
I am wondering to what extent this…
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Hi there,
We have a longitudinal study where plasma sample from mice at multiple age were subjected to Illumina Methylation array. In this case, we would like to identify differential methylated Cp…
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Hallo i am using wgbstools to visualize my Nanopore Data. So everything worked but i have a few questions regarding the Output. I segmented the Bam file and vis it with wgstools
wgbstools vis -r 1…
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Hello, I have been working with a sample that has a large heterozygous deletion on chromosome 15, where the other allele is methylated.
However, when performing methylation calling, I found that mos…
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Hi Wu,
I have some questions when using DSS to analysis differential methylation Sites on my WGBS methylation data:
1. I combined + - strands CG reads counts together to represent t…
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### Submitter Name
Arpad Danos
### Submitter Affiliation
Washington University
### Submitter Github Handle
arpaddanos
### Additional Submitter Details
_No response_
### Project Details
…
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I have been toying around with how to make tracks that show methylation in CpG, CHG, and CHH sequence contexts. The annoj browser does it very well (http://neomorph.salk.edu/epigenome/epigenome.html),…
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Hi,
My name is Alberto Rodriguez. Actually, I'm working with your package to analyze data coming from a epiGBS2 experiment using your protocol published in Biorxiv.
I have the following message …
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Hello,
I am attempting to run glint using conda 23.9.0 and Python 2.7.15. My data are from the EPIC chip v2 and CpGs annotated using [this annotation package](https://jokergoo.github.io/IlluminaHum…
cewim updated
11 months ago