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from slack conversation:
olga:is there a benchmarky paper showing sourmash’s performance in speed, cpu, memory, accuracy for contamination detection? trying to convince nextflow core devs to use it…
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This is a tracking issue for all the steps related to a document sanitization (aka content disarmament/reconstruction, aka malware mitigation) workflow.
The goal is a workflow that allows users to …
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### Description of feature
We can dump here any ideas for additional post-processing functionality we could consider adding
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I am running llama2 model in wikitext dataset. I just want try some other metrics so I modify the default YAML file(`lm-evaluation-harness/lm_eval/tasks/wikitext/wikitext.yaml`) to the following, just…
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in charcoal we are trying out 6-frame translations to do decontamination: https://github.com/dib-lab/charcoal/pull/120. The gather output that is reported is pretty lousy because it doesn't adjust for…
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The k_mer parameter should be set from the actual bloom filter. As it stands right now, the coder sees a default value being set and it looks (to the user and coder) that it can be set on the command …
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## contam_screen_param
field | value
-- | --
Structured comment name | contam_screen_param
Item (rdfs:label) | contamination screening parameters
Definition | Specific parameters used in …
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### Model introduction
ReflectionCoder is a novel approach that effectively leverages reflection sequences constructed by integrating compiler feedback to improve one-off code generation performanc…
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- Estimates of errors are made on the decontaminated traces. This is wrong since the error is based on the total signal received on a pixel. So we should use the combination of both modeled order to e…