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Hi!
I want to compare the results of one run of Inspector and one run of merqury using Illumina data, which datatype should I add if I use Illumina data?
Thanks a lot!
Marc
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So I ran MetaBIDX with given test data reads ( _r1 and __r2) fastq with my build index. And it ran successfully
![image](https://github.com/pdtrang/MetaBIDx/assets/78298300/d023f81d-6df8-40d1-bbf1-…
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I get an error like the following:
WARNING: Must specify a merged illumina fastq file with -illumina_1
WARNING: Must specify a merged illumina fastq file with -illumina_2
WARNING: Long read fil…
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It looks like FASTP is not able to detect *automatically* the adapter at all for miRNA-seq data.
For example, FASTP is not able to detect *automatically* the adapter in the SE FASTQ file from https…
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Hi Mike,
I am trying to run some Illumina NextSeq samples, but I am failing immediately during primer removal with this error:
Error executing rule remove_5prime_primer on cluster (jobid: 254, e…
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Hello! My nf-core/viralrecon run was halted due to R version clash. Please see the error message below -
ERROR ~ Error executing process > 'NFCORE_VIRALRECON:ILLUMINA:PLOT_MOSDEPTH_REGIONS_AMPLICON…
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Add annotation from Illumina package to Epimutations. Some interesting fields to be added are:
- Gene
- Gene position
- CpG Island
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Hi @brantfaircloth,
I'm considering forking and modifying Illumiprocessor to use other trimmers (trim galore, fastp). Is this a direction you're interested in illumiprocessor going? Are you open to p…
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Hello, I am running Lotus2 on merged paired end illumina reads and am coming up with a weird issue. I am able to go through read filtering then I get an error tha the SDM file is not empty, but when i…
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