-
Hi, thanks for this nice tool, can you give some suggestions about analysis on other species, like Macaque or Rat? I this maybe we need to replace gene names of human by homologous gene names in Macaq…
-
Hi all,
I am running into an issue when trying to follow along the instructions to analyse ligand-receptor interactions using CellCall.
when running the "TransCommuProfile" command, I am faced wit…
-
Dear stLearn Team,
I appreciate your efforts in developing such an effective tool for spatial transcriptomics analysis! As I explore the capabilities of stLearn with Xenium data, I have encountered…
-
Dear Neuronchat Team,
Thank you for this wonderful tool! Something that deals with neurons was really required.
I have some questions about the Neuronchat Database. The DB slot of neuronchat obj…
-
Dear professor sqjin,
I run ```netVisual_bubble``` and ```netVisual_chord_gene``` functions of cellchat to visualize cell communication, but got too many receptor/ligand interaction. I still woul…
-
Ultimately, the value of the LS model is to identify when Gas6 and PROS1 operate differently, either alone or when present in combination. If we identify cases where these behaviors take place, they c…
-
I read through the vignette and searched through Google but was unable to find an answer to my question. If someone can help me here I would appreciate it!
I have used CellphoneDBv2 to generate res…
-
Hi, I'm a new user to the CellphoneDB package, so it may be a user error on my part; but I think there are 85 ligand:receptor interactions in the CellphoneDB package that are backwards.
Here is the…
-
Hi CellChat team,
I am trying to use only the ligand-receptor pairs specified by myself, so I have to give up using the original CellChatDB, but there is no cofactor and complex in my ligand-recept…
-
Hi,
First of all, thank you for developing this package. Hope you can help me with the following: when calling multi_nichenet_analysis() my process keeps getting killed due to memory problems. I'm …