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We have previously discussed adding metagenomics compatibility by running fly in meta mode and doing genome binning.
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Dear Arkadiy Garber,
I just watched your FeGenie lesson and tutorial in the BVCN and, first of all, I wanted to thank you for the nice tool (and teaching materials) you & your colleagues released!
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from STAMPS 2022 - https://hackmd.io/vYaK2UngTWSkKmcpQMP6NA
associated presentations and tutorials -
[taylor on assembly and binning](https://github.com/mblstamps/stamps2022/blob/main/assembly_a…
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The accession BK010471 is for a crAssphage that is ubiquitous in human gut metagenomes ([link](https://www.nature.com/articles/ncomms5498)), and in particular is found in the 454 data set SRR073439.
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Phylogenetic analysis of genomes and metagenomes for the 1%.
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During the workshop today we discovered it is difficult to select data that has metagenomes AND metaproteomics . The bar chart in the upset plot is too small (n=17) to click on and the faceted search …
aclum updated
2 months ago
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Hi,
I'm trying to do a binning with metabat2 using the following config.yaml:
# ------ Samples ------
samples: '*' # specify a list samples to use or '*' to use all samples
# ------ Resources …
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Dear Byron,
First of, I wanted to thank you for developing this great piece of software. We are really excited to use it coupled with the metagenotypes generated from GT-Pro.
We are trying to de…
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Hi Ben,
Apologies for the multiple questions. I ran singlem separately on my metagenome reads and my MAGs. I then separated each marker and clustered them using the default species-level identity. …
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Hi,
I have pairs of metagenomes that I want to compare the similarity of them as well as figure out the % of one metagenome that is contained within the other one. sourmash gather & search seem to …