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## Environment
- [ ] Installed via pip (include the output of `pip list`)
- [ √] Using a conda environment (include the output of `conda list && conda list --revisions`)
- [ ] Using a Docker contai…
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Hi
I'd like to inquire if bgcflow allows for the analysis of a specific region within a contig. For instance, I'm interested in examining the sequence NT_187580.1, spanning positions 169942 to 188315…
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Hi Yang Lab,
Sorry for committing an issue on your repository - this is my first time communicating on GitHub and I still don't know the customs here. Anyhow, hi! I'm Yun, an undergraduate from Ols…
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https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?name=Symbiodinium%20muscatinei
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Hello,
I am running PhaME on around 2100 Salmonella genome assemblies and it runs without any error/interruption; however, all of the snp matrix files are empty except for the genome file names. A…
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Just wanted to know if there was a way to specify the hg38 reference genome for the `CNV.create_anno` step, I couldn't find any arguments that allow this but I could have missed something. Thank you!
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1899
KP.3.2+G25617A+G11761A, T21653C(S:S31P)
GISAID query: G11761A, T21653C, G25617A
No. of seqs: 14(China 9(Hubei, Gansu, …
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KP.3.1.1> T6405G(Orf1a:V2047G), T25236C(S:I1225T)
Query: T6405G, T25236C
Bug solved by Usher This branch has been split into 2 parts in usher due to the S:455-456 artefactual reversion. @angiehinri…
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I used a VCF file to generate a consensus haploid reference genome. Then, I mapped the RNA-seq reads to the reference. I found the output bam file only showed correctly transformed coordination on the…
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- Vicia/faba/genomes/Hedin2.gnm1.06GS
- Vicia/faba/genomes/Tiffany.gnm1.M2F3
- Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK
- Vicia/faba/annotations/Tiffany.gnm1.ann1.Y54X
- [x] Add collection(s…