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Hi juheon,
I have read your recent published paper "Epigenetic therapy potentiates transposable element transcription to create tumor-enriched antigens in glioblastoma cells", it is really solid res…
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Hi, I used FastANI for several plant genome and did get results. The ANI values were higher for species with closer genetic relationship. But I am not sure if the ANI values meaningful?
Thanks a lot …
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I am running Repeatmasker on a snake genome using a denovo TE library (created by RM2) on a HPC cluster using 20 CPUs. But the speed is very low and I encounter node failure. I contacted HPC support a…
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hi,
This is a very great work for genome annotation.Thank you very much.Now I use the funannotate to update my genome annotation using the RNAseq data.I only use the "funannotate update " command to…
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Hi, I want to produce a vcf file (for phylogenetic analysis) for 15 whole genome, same-species assemblies. I am following the step-by-step pipeline documented under the heading "Yeast Genome" in Min…
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Could imagine a step which annotated MT with MFAnnot (https://github.com/BFL-lab/Mfannot) and then either used different locus prefix (eg add an M to the locus name), to annotate these.
Generally …
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If Genome upload/install fails, any resulting files will be left on disk, probably causing new genome upload/install to fail. Also RemoveGenomeTool only lists genomes that have preproprocessed content…
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Recently bacterial labs have started to perform iCLIP and our lab is planning to perform experiments on some bacterial strains. It will be a big enhance to support all of this community with a tool av…
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Hello,
I am trying to run hisatgenotype. I installed both hisat2/2.2.1 and hisatgenotype. Here's my exact command:
```
python3 /cluster/home/user/hisatgenotype/hisatgenotype --base hla --locus-li…
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I used HGTector2 to predict HGTs in my genome, and it classified my genome as "phylum Proteobacteria". The prediction results showed that 318 genes were identified as HGTs, but only 40 of them had a '…