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Hello,
thank you for parsnp and Harvest, it's been a joy running the tool using ~900 genomes.
But when it comes to **>1000 genomes**, parsnip runs with the following warning but **does not gener…
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Hello,
I'm trying to follow your MAmBA test code using the following command after downloading the files from https://sites.google.com/a/uniroma1.it/valeriofulci-eng/software :
_/mamba.sh -a TGG…
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### Description of the bug
I tried running the pipeline using the samplesheet and it gave me an error complaining about the number of column names. This disappeared when I remove the sample columns. …
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### Description of the bug
I am using conda to run the nf-core rnaseq pipeline on a machine that there is no root access, using slurm. The conda environment was created to use python 3.11. I have per…
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Hi, @mrvollger
Thanks for this cool tool. But `paf-to-sam` seems not worked as the aligner did (eg. `minimap2`).
- The exact command that produced the error along with the error message.
I …
baozg updated
8 months ago
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This tool looks great and I'm exploring it, but I'm having the following issues while using it, and I'd appreciate it if you could assist me with it.
**[Info] Paramater:** refgenomefile=Np.fasta, min…
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### Description of the bug
I'm getting an error message when running rnasplice about the sashimi_plot. The error message is copied below:
-[nf-core/rnasplice] Pipeline completed with errors-
ERRO…
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Run fails due to JAVA S3 error.
# Error Code
```
Error executing process > 'NFCORE_RNASEQ:RNASEQ:ALIGN_STAR:STAR_ALIGN_IGENOMES (4_L002_ds)'
Caused by:
Not a valid S3 file system provider fil…
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When downloading this file ('iatlas-ici-features.tsv') from the Synapse portal it's not given in the description what the meaning of the columns are.
There seem to be columns linked to various stu…
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## Bug report
### Expected behavior and actual behavior
Hello, hope you are doing well!
I expected to be able to run `nf-core/rnaseq` using AWS Batch. We created a the first two CloudForma…