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Hi @oushujun, first of all, thank you for writing EDTA; I really find it very useful to annotate TEs of recently assembled genomes.
This is just a question related to TEs annotations using only EDT…
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i.e., identify cases where there's already an SVA and we're detecting an extension of the existing SVA repeat:
"fix the problem with SVA calls where internal VNTR expansions are being called as new m…
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Dear DROP team,
Thank you for developing DROP. Recently, I raise an error while running snakemake aberrantSplicing with my own and external RNA-seq data:
rule AberrantSplicing_pipeline_Counting_…
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Hi Shujun,
I have created a independent conda environment and installed EDTA v2.2.0 using mamba.
But encountered some issues at the TIR-Learner step uisng the test fasta file, see the job running…
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After I fixed several issues with your help, the new issue popped up.
Below is the error:
```
Error_ executing process > 'get_vhla (test)'
Caused by:
Process `get_vhla (test)` terminated wi…
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I called TE elements using RepeatModeler and RepeatMasker from genome of *Phaeodactylum tricornutum* and here is the `out` file by RepeatMasker:
[Phaeodactylum_tricornutum.ASM15095v2.dna_sm.topleve…
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**What do you want to know?**
I'd like to ask whether RepeatModeler could be used on Linux/MacOS ARM64 machines ?
I wanted to use it via the Docker image but it seems it is only for linux/amd64,…
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hi,I have a question
I run RepeatProteinMask and get the following two files .masked and .annot. Is there any way to get statistics like .tbl in the RepeatMasker result file?Can you help me, I will b…
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I tried to convert dbSNP vcf to bed for use: ftp://ftp.ncbi.nlm.nih.gov/snp/redesign/latest_release/VCF/GCF_000001405.25.gz
I `gunzip` it and run with the following command:
`bin/vcf2bed --do-not-…
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Hello, I am trying to run velocyto via the CLI on files generated from 10x Cell Ranger cloud analysis platform. This outputs filtered/raw count matrices as .h5 files, genome-aligned BAM and BAM index …