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Scott-Devine
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MELT-LRA
MELT-LRA: Mobile Element Insertion Site Classifier
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Modify filter_and_count_MEs.py to merge by cALU/LINEu signature
#30
jonathancrabtree
opened
10 months ago
0
Resolve match conflicts in 39 sample 40/80 set.
#29
jonathancrabtree
opened
10 months ago
0
Off by one in S-W span calculation
#28
jonathancrabtree
closed
11 months ago
1
Ensure that 5' inversions are correctly handled
#27
jonathancrabtree
opened
11 months ago
0
Revisit/revamp coverage calculation
#26
jonathancrabtree
closed
11 months ago
2
See if UI can be run without a web server
#25
jonathancrabtree
closed
11 months ago
1
Improve packaging, portability and documentation
#24
jonathancrabtree
opened
1 year ago
0
Generate architecture diagram
#23
jonathancrabtree
closed
11 months ago
1
Add support for VCF output.
#22
jonathancrabtree
closed
5 months ago
2
Include genotype and haplotype info in CSV and UI.
#21
jonathancrabtree
closed
1 year ago
1
Create summary view based on CALU/LINEU diffs
#20
jonathancrabtree
opened
1 year ago
2
Ensure TSDs and poly(A) tails are accurate and consistent
#19
jonathancrabtree
opened
1 year ago
0
Indicate positions of single-base changes in graphics.
#18
jonathancrabtree
closed
1 year ago
5
Add ORFs to graphics for full-length L1s.
#17
jonathancrabtree
closed
1 year ago
1
Detect/filter SVA calls within existing SVAs
#16
jonathancrabtree
closed
1 year ago
3
Add % identity (with gaps) to VueJS viewer.
#15
jonathancrabtree
closed
1 year ago
0
Error in coverage calculation
#14
jonathancrabtree
closed
1 year ago
1
Table pagination controls inaccessible except on wide screens
#13
jonathancrabtree
closed
1 year ago
1
Nonexistent polyA rendered in SVG figures
#12
jonathancrabtree
closed
1 year ago
0
Improve TSD/polyT detection
#11
jonathancrabtree
opened
1 year ago
1
Adjust insertion coordinates based on orientation of ME insertion.
#10
jonathancrabtree
closed
11 months ago
1
Improve accuracy of coverage calculation.
#9
jonathancrabtree
closed
1 year ago
0
Compute percent identity using only the portion of the alignment used in the coverage calculation.
#8
jonathancrabtree
closed
11 months ago
3
VueJS results viewer
#7
jonathancrabtree
closed
1 year ago
7
Detect and report 3' sequence transduction
#6
jonathancrabtree
opened
1 year ago
0
Exclude chrY from reference set for variant calling if not present in genome sequence
#5
jonathancrabtree
opened
1 year ago
0
Fix SVA identification
#4
jonathancrabtree
closed
1 year ago
4
Add HTML output option.
#3
jonathancrabtree
closed
1 year ago
2
Implement ME subfamily classification
#2
jonathancrabtree
closed
1 year ago
2
Refine polyA/polyT detection
#1
jonathancrabtree
closed
1 year ago
0