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Several ontologies contains annotations that have not been manually curated/edited, but are instead the result of some kind of automatic generation process.
For example, FlyBase’s _Drosophila_ anat…
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Should hepatobilliary system be made a child of digestive system? Email thread:
Hi, MPO colleagues!
Shouldn't liver be a part of the digestive system? In the current MP, it is listed separately? See
…
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The plant trait ontology [TO](https://obofoundry.org/ontology/to.html) is the conceptual counterpart of OBA, but it contains (or will soon contain, as per @diatomsRcool) some phenotypey terms now, lik…
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Nico noted in [phenio #33](https://github.com/monarch-initiative/phenio/issues/33#issuecomment-1375896806) that we should be be mapping anatomy terms to Uberon rather than using the species specific o…
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suggested child under anatomy and morphology trait [(TO:0000017](http://purl.obolibrary.org/obo/%28TO_0000017))
-> cytological character -> ploidy level
and corresponding definitions:
- cytolog…
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proposed child of seed anatomy and morphology trait [(TO:0000184](http://purl.obolibrary.org/obo/%28TO_0000184))
- kernel type - Visual rating of kernel type from 1 -11 where 1= floury, 3= dent, 6= f…
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The Uberon taxon-independent common_anatomy subset is replacing the obsolete CARO ontology. It would be helpful to GO's usage of Plant Ontology terms if there were more links from PO to those Uberon t…
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http://localhost:8080/api/match/jaccard?id=HP:0007280
```
ontologyUris:
- http://purl.obolibrary.org/obo/hp.owl
ontologyDataUris: []
dataTsvs:
- ./Hs_disease_phenotype.txt
curies:
# …
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Bgee provides numerical 'rank' scores for their gene-anatomy associations, that seem to be based on factors such as tissue specificity, expression level relative to other tissues, number of 'evidence …
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Please list any tools or applications developed to use Phenoscape, ontologies, or machine learning that you have developed or would like to learn.
Please share links and documentation for these too…