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Hello
I am trying to run the `fitGAM` command on a multi-core linux server.
The machine has 64 cores and I want fitGAM to only use 16 cores.
I've followed the vignette's suggested method for ru…
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Hello,
I am using DSS to detect DML for WGBS data and got an error when performing statistical test for DML with smoothing.
My code:
`dat1.1 = read.table("chr1-ZmBS-BS1-1-CpG.bismark.cov.tsv", head…
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From: Maarten van Iterson mviterson@gmail.com
Are there any plans to support reading idats-files in parallel using the
BiocParallel functionality? For example, read.450k.exp could easily be
paralleli…
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I run the mae,but have some problem.
`[W::hts_idx_load2] The index file is older than the data file: /Users/huizhou/Documents/1_allelic/drop_demo/qc_vcf_1000G_hg19.vcf.gz.tbi
Error: BiocParallel e…
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_BiocNeighbors_ and _BiocSingular_ follow _BiocParallel_'s paradigm of using `*Param` objects to specify the algorithm and parameters to use for NN searching and SVD, respectively.
I have recently…
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Hello,
I am trying to implement the package for outlier detection and I am stuck on the `findEncodingDim` step.
I looked into previous issues and solutions and implemented the following - my m…
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Hi,
I am encountering the issue with the var.features which is not present in the meta.data. I tried to manually add the col var.features and still no luck.
`query.projected
apal6 updated
2 months ago
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Would it be possible to implement a function that can plot (for a given gene set) a GSEA plot similar to the one here:
[https://yulab-smu.top/biomedical-knowledge-mining-book/enrichplot.html#runnin…
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As the samples get processed one by one, it might be of interest to try and parallelize that so that runtimes might be significantly shortened, especially when running many samples at once
`BiocPar…
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Is it possible to replace the `sapply` and `apply`'s in the code with `BiocParallel::bplapply`? For example `mclusterSim` becomes really slow when the number of clusters / the size of the clusters get…