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When reading the source code for `cytominer_eval.operations.precision_recall()` I noticed that the similarity_melted_df variable counts each replicate pair twice, e.g. A1 --> A2 and A2 --> A1.
This …
FloHu updated
2 years ago
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### 1. Motivation
Exploratory visual QC (#7) and retrievability metrics (#12) analyses showed that: (1) there are patterns in cell count variation across well positions / plates / batches, and (2) …
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I'm receiving an `InvalidAccessKeyID` error after deleting my AWS configure ID from `maple`. I wanted to try the `no_sign_request=True` option before adding credentials back to maple, but received an …
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How shall users interact with the codebase? Let's track our thoughts and decide here
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Hi @bethac07!
I have been testing the collate function for a project I am working on in the @gwaybio lab and I have come to a bit of a roadblock.
I have done some digging, and based on the [appe…
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Juan asked this:
I need to process the LINCS dataset to proceed with the plan we discussed for LUAD. I'm going to need access to the images, which is a lot of data! Here is my plan to make it effic…
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Logging an issue for [this job run](https://github.com/cytomining/pycytominer/actions/runs/9522623268/job/26252551786) and error with Docker login.
d33bs updated
3 months ago
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An error occurred with two of the tests during a scheduled and un-locked dependency test earlier today. The only failing test in these cases is: `tests/test_convert_threaded.py::test_convert_s3_path_c…
d33bs updated
2 months ago
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Z-normalization of features is performed and a total of 471 features are selected for downstream analysis
**Plate cell densities**
Metadata_Plate': {SQ00015142, 68708
…
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From: Anne Carpenter
Date: Fri, Dec 1, 2023 at 2:44 PM
Hi Ardigen/Ksilink,
Using this attached plot from Ardigen of the top 25 most anti-correlated pairs, I saw MYT1-RNF41.
So, I found someon…