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I have had good experiences with LJA (La Jolla Assembler; [GitHub](https://github.com/AntonBankevich/LJA), [paper](https://www.nature.com/articles/s41587-022-01220-6)) on bacterial genomes. It only wo…
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Racket newcomers are immediately confronted with four equality operators:
- `equal?`, which does what you'd expect most of the time
- `=`, which does what you'd expect if you're used to IEEE numbe…
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Hi,
Considering the fast assembly of this software, when I provide the mitochondrial genome as "-s", the mitochondrial contigs can be quickly assembled?
Deyuan
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Hi there,
I am using DiscoSnpRAD to explore the structure and demography of my target organism. For the demography, I have used the dadi software on an SFS and would like to convert the results of…
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### Instructions
gatk version 4.4.0.0
When I run gatk GenotypeGVCFs, it shows this error:
A USER ERROR has occurred: Bad input: Presence of '-RAW_MQ' annotation is detected. This GATK versio…
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Hi,
I am sorry, but I have another question. I am trying to create a counting dbg for multiple files and tried to do that now in multiple ways and so far nothing worked. At the moment, I get the fo…
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Hey all-
I'm working to install `piscem` on my compute cluster and ran into the error below. Would appreciate any help on how to proceed!
Here's a few snippets about compiler versions loaded:
``…
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Hi there! I was hoping that you would eventually make an actual binning tool after I read your GraphBin papers! Looking forward to using this.
One aspect that many binners are lacking is their abi…
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Hi, thanks for providing this great toolkit!
I found this toolkit to be the only one I could find that is able to provide the fasta sequence for a path. The only thing is, I have to manually specif…
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This patch implements generators for Kautz digraphs, Imase and Itoh digraphs, and Generalized de Bruijn digraphs.
CC: @nathanncohen
Component: **graph theory**
Author: **David Coudert**
Revie…