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Hi Aaron and Brent,
On the the gemini main page you sate "GEMINI is very strict about adherence to VCF format 4.1." However, with the recent update to GATK4 the default, and unmodifiable, output of H…
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Hi, thanks for the nice tools.
Some of my samples have uneven read length. (e.g. sequencing data from IonTorrent sequencer)
When I tried to run EukDetect with the average read length of the sample…
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Try viralrecon with ion torrent samples.
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As usual, it is probably my understanding that is at fault, but If according to the VCF specs: "QUAL [is the] phred-scaled quality score for the assertion made in ALT. i.e. give -10log_10 prob(call in…
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Hello,
We would like to add the Ultima Genomics platform to the list of allowed platforms for the PL tag in SAM.
Reference [here](https://www.biorxiv.org/content/10.1101/2022.05.29.493900v1).
I …
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Dear Developers,
Greetings from India,
Thank you for providing such detailed documentation for the users. Being a novice to the Bioinformatics world, even I was able to install the S/w and execute…
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### Description of feature
Hi, I have a couple of projects to analyse where the primers are degenerate and the last 3 or 5 bases have ambiguities that allow them to match the first 3-5 bases of the p…
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### Description of feature
Hi (again, sorry).
We would like to test ampliseq with CO1 data as an automated generic metabarcoding workflow, however no CO1 taxonomic databases are currently implemen…
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Dear all,
I have one question, is it possible run snippy at same time with fastq from two different sequence techniques (illumina and iontorrent), that ones are paired end and others are single end??…
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Hi there,
Thanks for making this tool - there's definitely a need for a consistent framework for calling pseudogenes across disparate prokaryotes, and this seems like a great method to do that.
…