-
Hello,
Would it be possible to add a TaxID column to the eukcc.csv bin file that currently has completeness and contamination? Currently, that TaxID is buried in the log file and it would be great …
-
Hi,
I'm trying to do a binning with metabat2 using the following config.yaml:
# ------ Samples ------
samples: '*' # specify a list samples to use or '*' to use all samples
# ------ Resources …
-
Hey There,
Thank you for providing a super cool pipeline.
I managed to get it to work with the recent genomad integration, but I got an error at one of the last steps of the pipeline.
My command…
-
Hello dbcan devs!
Thanks for developing the dbCAN command line tools, and thanks for providing such helpful and detailed documentation and tutorials!
I'm using dbCAN to annotate CAZymes/CGCs/su…
-
Hi,
I have pairs of metagenomes that I want to compare the similarity of them as well as figure out the % of one metagenome that is contained within the other one. sourmash gather & search seem to …
-
1. Create a directory with all trimming reads by city
2. Create the symbol link for genomes y metagenomes
3. Verified anvio installed in server Alnitak
-
Hello,
I am currently struggling with metagenomes obtained from environmental biofilms (river rocks). I have 50 metagenomes but I obtain only 100 checkV high-quality viruses. I would expect a lot m…
-
@luizirber, one more thing for today (not intending to distract you), it would be really interesting if you could calculate the species accumulation curve (SAC) for hash sets in clusters of metagenome…
nmb85 updated
3 years ago
-
Dear Byron,
First of, I wanted to thank you for developing this great piece of software. We are really excited to use it coupled with the metagenotypes generated from GT-Pro.
We are trying to de…
-
When I run the read_qc module
metawrap /home-2/eerteki2@jhu.edu/scratch/miniconda2/envs/metawrap-env/bin/metawrap-modules/read_qc -1 /home-2/eerteki2@jhu.edu/data/Emine_gypsum_metagenomes/RAW_READS…