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I'm running a postgres container to create a database connection;
To be able to get the next value for a `sequence` i created a function like this;
```sql
create sequence seq_urls_id
```
…
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Hi,
Great tool for implementing L. pneumophila SBT! Thanks.
I'm trying to call SBT using nanopore sequenced multiplex PCR amplicons. However, I get "no product" results for some of the alleles. S…
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Hi, I have a query protein sequence and I want to find orthogroup for that sequence. I don't know in howmay species its orthologues are present. How can I run orthogroup for it. What I understood from…
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## Context
If the template database (such as pdb100) contains the structure of the query sequence, will "hhsearch" return the structure information of the query sequence as a part of template? If so,…
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The sequences have not been indexed. Please run "prokka --setupdb" first.
![Screenshot (481)](https://github.com/tseemann/prokka/assets/153951377/b00fb2fa-c665-479c-a1e8-d10bf309a358)
i'm pretty s…
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Hi! Thanks so much for this package.
I am working some rna-seq in the maine species without genome
Your guide presents all downstream analysis example and R scripts with genome index, so how to …
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## Expected Behavior
Rather than outputting the MSA files I get a segmentation fault.
## Current Behavior
I get a segmentation fault when I add the `--allow-deletion` flag. Works when I don't use…
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Is it possible to add functionality to build the off target database using custom PAM sequences?
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- [x] Introduction to Biological Databases
- [x] Introduction to NGS sequencing
- [x] Introduction to sequence alignment
- [x] Introduction to Phylogenetics
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Hi,
I am trying to build a database from RefSeq and GenBank genomes.
The total size of the ~1.9 million compressed genomes is ~8.5T. Since the data set contains many genomes, some of which with ex…