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@serewilliams : We have been noticing that some of the bolded words in the print version do not show up online, but we do want the students to include all bolded terms from the print version. To help …
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Hi,
I was able to run the tutorial, however, when I try my own data I get this error. I am completely new to this and would like to learn. Thank you!
An unexpected error has occurred:
(tens…
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This seems to me like a pretty obscure problem, but I think it is technically a bug.
## Steps to reproduce
1. Open up a plot or biplot in Emperor (I checked and this error is reproducible with n…
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Similar to:
https://plot.ly/python/reference/#layout-scene-aspectratio
For 3d plots
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Hi , I am trying to understand the mmvec tool, but a quick question can we use this tool with shotgun based metagenomic data with metabolomic data?
If yes, do i need convert them into biom file or is…
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The produced biplots can sometimes have surprising proportions explained, such that `axis 1 < axis 2 < axis 3` or where the proportion explained for an axis is > 100%. It would be nice if `mmvec` gene…
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When visualizing biplots, the proportion explained for axis 1 is less than the proportion explained for axis 2, which is less than the proportion explained for axis 3. An example of this can be found …
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I'm trying to do a biplot in matplotlib and was wondering if there is a way to extract the loadings from the PCoA OrdinationResults object?
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**Addition Description**
One thing that could become increasing helpful with the introduction of feature-specific stats (i.e. songbird, aldex2, rhapsody, qurro) is the ability to flip ordinations.
…
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Attempting to create a conda environment with both qiime2 and songbird and keep running into issues.
Created the qiime2 environment using the conda installation instructions as specified in the doc…