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Hello I'm trying to search hydrocarbon-degrading-genes over my metagenome assembled genomes (MAGs) using a hmm profile.
I'm testing the profile of the genes (my_genes.hmm) with one of my built geno…
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Hi,
I would like to align the list of metagenome-assembled genomes to merged-metatranscriptomics libraries. Please suggest a reasonable command to run MetaGT? I tried the following, but it complains…
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I've quality trimmed my HISEQ reads and converted to fasta. I want to run these through `barrnap` but I'm not getting any hits with default settings. I was wondering how I could adjust these paramet…
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Hi,
It's really an exciting tool for the mouse gut microbiome analysis! In my study, I have obtained the 16S rRNA gene V3-V4 amplicon sequencing data of C57BL/6J mice. I'm trying to use the pre-bu…
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## The need
Finally got anvi'o installed but now I'm seeing the following message when trying to export fasta:
```
Config Error: The database at 'CONTIGS.db' is outdated (this database is v9 a…
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- [X] I checked and didn't found a related issue,e.g. while typing the title
- [x] ** I got an error in the following rule(s):** ` run_spades `
- [X] I checked the log files indicated ind…
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Hello, I'm now at the webin validate step.
I got this error file:
```
ERROR: Could not find sample "ERS14576595". The sample must be owned by the submission account used for this submission …
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Hello, I used profile on metagenome assembled genomes I recovered from my samples. However some are missing from the genome_info.tsv files. I guess it's just that the MAGs were not detected in my samp…
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Dear all,
I am using Medaka 1.2.3 to polish bacterial genomes. To give some context, I sequenced the total DNA of an insect on a MinION 9.4 flowcell to assemble the genomes of two bacterial symbio…
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Does this tool also work for archeal genomes or metagenome-assembled genomes? Thanks!