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Example:
`ontogpt extract --model gpt-4 -t gocam -i AT2_pulmonary_surfactant_response.txt -o AT2_pulmonary_surf_gocam.owl -O owl`
Fails with:
```
lot_usage for undefined slot: id
File "", l…
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# Goal Alignment
**H2 Goal 2: The quality of CZ Census metadata is improved.**
---
# Technical Design
[Tech Spec: Increase the velocity of dataset schema evolution and dataset migration](https://d…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### New feature
When looking at a data dictionary I would like to get a quick idea if it is valid according to our…
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**Describe the bug**
Taking the example .yaml from https://linkml.io/linkml/intro/tutorial05.html, but using the command described here https://linkml.io/linkml/generators/pydantic.html, e.g.
`gen…
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**Is your feature request related to a problem? Please describe.**
Currently, the Excel spreadsheet generator in the LinkML framework outputs one large monolithic Excel file with multiple worksheets,…
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New build of kg-phenio fails in the transform stage due to:
```bash
11:07:07 Converting data/raw/phenio.owl to data/raw/phenio.json...
11:07:07 Complete.
11:07:07 Transforming to KGX TSV with c…
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Study: gold:Gs0110119 / nmdc:sty-11-zs2syx06
Title: Meadow Soil Metagenomes from the Angelo Coast Range Reserve
Omics Type(s): n/a - Biosamples only
Steps:
- [x] Run `update-study` command (nmdc…
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Sorry, I am not familiar with knowledge graph things. I want to know can I create LinkML yaml from one OWL file? Like https://www.ebi.ac.uk/ols4/ontologies/bao BAO ontology from EBI?
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**Describe the bug**
This bug is related to issue [#85](https://github.com/cancerDHC/ccdhmodel/issues/85) on the [ccdhmodel](https://github.com/cancerDHC/ccdhmodel) repo. The issue highlights the fac…
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https://github.com/GenomicsStandardsConsortium/mixs/tree/main/release/excel