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Hi,
Trying to install on a different machine (Ubuntu 20.04.1; all dependencies successfully installed through conda, inc gcc 10.3).
I get:
03)Installing gfatools.
gfatools installation failed,…
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I test the example dataset within singularity, but met some probelm until ###GMAP MAPPING STARTED AT: 13:06:26 21-03 ###
###BUILD INDEX###
bellow is Error message:
Traceback (most recent call l…
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Hello,
I am encountering an issue where Canu fails to generate corrected reads because the overlap store is empty. Below are the details of the issue, steps taken to troubleshoot, and relevant log o…
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Trying to run the new version but get
`Segmentation fault $bindir/smis_shred -rlength $fakelen -step $step -minlen $minlen $fqfile fakemates_1.fastq fakemates_2.fastq >> $outp`
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Here are the versions I used
```
dorado_basecall_server --version
Dorado Basecall Service Software, (C)Oxford Nanopore Technologies plc. Version 7.1.4+d7df870c0, client-server API version 15.0.0
…
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Hi,
I have been trying to manually select the cutoffs by running "hist_plot.py". As I understand, we are supposed to select cutoff values from the count-read_depth image and manually change the "cuto…
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Hello,
I'm using trycycler to assembly a bacterial genome with pacbio data, for generating assembly I modified the ```miniasm_and_minipolish.sh``` script to adress the reads type (```minimap2 -x ava-…
fetyj updated
1 month ago
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Hello, can I use espresso to analyze Pacbio seq data? After reading the paper, I got an impression that the pipeline is designed for the Nanopore seq. I really enjoyed using this pipeline, but I just …
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Hi,
I'm curious if it's possible to run npScarf with ONT reads aligned to a reference genome (consisting of unique contigs). I've aligned the long reads with `minimap2` to generate an indexed and s…
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Hi there,
Thank you so much for developing such a good tool to identify the polymorphic TEs.
I am wondering if GraffiTE can work with 10x linked reads? The contig-levle assembly of 10x linked r…