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### Operating System
Other Linux (please specify below)
### Other Linux
Red Hat Enterprise Linux release 8.6
### Workflow Version
v.1.2.1
### Workflow Execution
Command line (Cluster)
### Othe…
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I am new to this method of genome assembly, so I am struggling a little with installing Canu.
I think I should use the following command (but I am not sure):
`curl -L https://github.com/marbl/can…
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Hi,
Thank you for making a pipeline for nanopore reads analysis.
I have some fasta sequence files from the nanopore sequencer that I want to analyse using the pipeline. I had nanopore amplicons …
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I attempted to use the tool with the BAM file generated from demo data and encountered an error. Could you kindly provide assistance with this?
```
(venv) (base) kamada@Lalithas-MacBook-Pro Nano…
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I have aligned the Nanopore reads to reference genome command:
minimap2 -ax map-ont -t 8 /ref ./111.fastq.gz >111.sam
This command generated Sam files. but when I am converting sam to bam
samtool…
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Hello,
We were using the dev-branch and running the example Nanopore data and it worked correctly without errors, but we are having issues running Natrix with our own data (also Nanopore data). We …
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canu -d '/home/ubintu/sars-cov-2_test/4_canu' -p prefix genomeSize=30K -nanopore-raw '/home/ubintu/sars-cov-2_test/3_NanoFilt/Filtered.fastq' -stopOnReadQuality=false
Don't panic, but a mostly harmle…
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Hi developers, I think there is a small problem with `--contam`.
In the `main.rs` line 235-242, `minimap2` was deployed for alignment, but with the `LrHq` preset.
```
fn setup_contamination_filte…
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Dear Brendan,
I know that you were considering something else in terms of making a long-read model, but I wanted to try and make a model and classifier based on [these CRAM files](https://github.co…
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Hi,
I got Nanopore full-length transcriptome data from a **PromethION 2 Solo** machine.
For the library preparation, we used the **Native Barcoding Kit 24 V14 (SQK-NBD114.24)**.
**Can I use …