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I am attempting to create a simple module which converts gbk files to "feature.tab" Patric format so I can run your amazing code :). However, in your code I am having trouble finding the definition wh…
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Dears,
Thanks for making a great program. I've run into an error message and I am looking for guidance on how to resolve it.
I have installed MitoFlex on my Linux Ubuntu OS and have installed al…
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I am doing "Many to Many" ANI calculation using fastANI and getting following error,
$ fastANI --ql /home/ncim/ncbi_genomes --rl /home/ncim/ncbi_genomes -o home/ncim/ncbi_genomes/all.out
>>>>>>>>…
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Hello, I used Jellyfish to assemble the histogram plot that I plugged into the GenomeScope2 interface. This work is being done on a diploid crayfish genome. I need help interpreting the very slanted n…
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Dear MMseqs2 team,
Can you please give some advice on how to proceed with clustering a large set of short k-mers, something between 7-mer and 9-mers? I tried playing around with linclust but it's…
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Hello COBS team,
Any possibilities to also support amino acid sequences (20 alphabets instead of 4 for DNA). I found this to be extremely useful for genome query/search.
Thanks,
Jianshu
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[This paper](http://link.springer.com/chapter/10.1007%2F978-3-662-48221-6_16) describes a a colored de-Bruijn graph representation for "pan-genome storage".
@christinaboucher said they can't handle t…
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Hi,
Thanks for building fast and efficient tools!
I wanted to ask if there is a separate repository or source of the Kmer Bin Map (KBM2) tool. I am interested in using this part in one of my pro…
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Hi @cdarby
Thanks for making this tool! I'm having some trouble interpreting the outputs, and I'm hoping you can help.
So I've run the pipeline twice now on two different 3' scRNA-seq PBMC data…
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Hello SchulzLab,
I wanna use ORNA to normalize my datasets and I tried it on an fastq file but failed. This fastq file is the RNAseq sample with 150bp read length and ~24 million reads.
My command i…