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### Description of the bug
When I run nf-core/mag with the
```
--host_fasta_bowtie2index "/path/to/references/"
```
The bowtie log file gives me the following warning
```
Warning: Output file './…
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when i trying building project, i got this errors:
The type or namespace name 'xna' does not exist in the name…
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Hi, I am trying to run virsorter2 on my contig sequences. I keep encountering this error in "circular-linear-split". At first, I thought i had duplicate sequence names but I checked and there were non…
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Hello I'm trying to create the standard Kraken 2 database, with the following command:
kraken2-build --standard --threads 16 --db kraken-Sdb
I'm getting this:
Step 1/2: Performing rsync file …
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I have assembled a single haplotype and aligned it to the hg38 reference genome. Then, I used SVision to call structural variants (SVs). When I called SVs using each haplotype separately, both haploty…
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Hello, I want to use padloc-2.0.0 with the fna option it works well but when I want to to use it with annotated proteins with the --faa and --gff options I have this issue ERROR >> 3 protein sequence…
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I'm getting **CMake Error: install(EXPORT "FAudio-targets-shared" ...) includes target "FAudio-shared" which requires target "SDL3-static" that is not in any export set.** when using:
```
SET(XNAS…
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### Report
while running dbCAN on WSL machine I get an error after using command
Name:~$ run_dbcan EscheriaColiK12MG1655.fna protein
***************************1. DIAMOND start*******************…
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Hi Prof. Ou,
My EDTA was wrong in the TIR prediction, and the running log is as follows:
```shell
#########################################################
##### Extensive de-novo TE Annotator…
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**Operating system**
redhat
**Package name**
```
pbmm2 1.13.0
Using:
pbmm2 : 1.13.0 (commit v1.13.0-2-gbcd99f5)
pbbam : 2.4.99 (commit v2.4.0-23-g59248fe)
pbcopper : 2.3.99 (comm…