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Hi,
thanks for developing Genion. I use Genion to analyse a small dataset of ~14000 reads. The system log file says, "
Normal reads: 14188
Homologous chimeric reads: 1
Fusion candidate chimeric r…
ssscj updated
2 years ago
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![image](https://github.com/alexdobin/STAR/assets/126665257/1b196fd5-20b5-429b-839d-020cf3541d31)
![image](https://github.com/alexdobin/STAR/assets/126665257/f2a3ad83-b279-4b63-8a4f-2c003c983eeb)
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The latest version of STAR can quantify gene counts on the fly, this should be incorporated into the FP detection aspect of fusions.
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Good work and a useful tool for gene fusions!
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Hi!
I am trying to import weights from predixcan and fusion and I get an error for each method.
I have the following versions of
pandas 1.3.5
pandas-plink …
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Hello.. I am currently having an issue with the annotation part. I am using Linux to perform CIRCexplorer2 analysis.
After aligning everything with STAR as described by you,
for instance:
`S…
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Hi,
I am using STAR-fusion to discover the gene fusions from target RNA sequencing data.
The sample we used is collected from lung cancer patient, with known fusion transcript ALKV1.
By buildi…
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Hi Daniel,
i have noticed the same issue in version 1.33 for IGH@ locus and MYC.
Could you please have a look at it? Thank you.
### IGH@
chr14:105,556,000-106,883,700 (hg38 location)
FusionCatc…
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Hi,
I am running Aeron on our institute's LSF cluster. When I run the fusion snakefile, the loose_gene_fusion file has >157K putative fusions. With 60 cores, the fusionfinder rule processes only 50…
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Can I use this soft to call fusion gene from RNAseq data?
Could anyone give me some advice?
thanks so much !