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I am trying to assemble a 2.8g plant genome genome with ONT sequecing data. I have been getting a segmentation fault when i try the following
python bin/flye --nano-raw /group/pasture/Saila/clea…
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Can I use mOTUs to identify microbiome in Metatranscriptome sequence? And does mOTUs already include binning process? Do I still need binning after get the mOTUs results?
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Dear GTDB-Tk team,
I am using gtdbtk de_novo_wf to analyze a set of Metagenome Assembled Genome (MAG). I want to obtain a tree with only my MAGs. I use the following command:
"gtdbtk de_novo_wf --…
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I have been read your publication and your work. However, I want to know why SameStr extracts MetaPhlAn2 marker sequences from reference genomes. It seems that it is not necessary for user to extract …
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Dear Metabolic Team,
I recently installed your pipeline and used it to map metatranscriptomic sequences against metagenome assembled genomes (that I also have already annotated and with a inferred …
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Hi again,
This is not an issue, but I have a conceptual question about using (or not using) the `--norm` flag within the different genies in MagicLamp, and I realize it might be research question d…
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(this is going to be anecdata for now, because I ran it a month or two back and forgot the details)
in brief, I wanted to play around with data from [Generation of lineage-resolved complete metagen…
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### Description of feature
Phylogenetic markers are genes that can be used to reconstruct the evolutionary history of organisms and to profile the taxonomic composition of environmental samples. Effo…
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Dear agudys:
Thanks for your great work about this tool. When I am doing the host prediciton using by PHIST, there raises a question: I use Virsorter2 to find some putative viral sequence i…