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failed running with a different format fasta doc while running the following line:
```
average_nucleotide_identity.py -i //genome -o //pyani_result -m ANIm -g -v --write_excel -l log.txt -f
``…
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Error during tilling generation. Please see /data2/bma/lcy/nanopore/assemblyA1_/intermediate_files/opera_long_read/GAPFILLING/TILLING/tilling_1.out and /data2/bma/lcy/nanopore/assemblyA1_/intermediate…
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I have successfully installed Phame on my Desktop computer through conda (Ubuntu 16.04 64 bit OS; 8 GB RAM, Core i7 processor). I had ran the test files successfully, however while I run my genomes of…
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Hi malonge,
Thanks for the useful tool. I have got three assemblies (one monoploid genome and two haplotype assemblies) of a diploid plant using HiFi+HiC. Because the haplotype assemblies had …
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Hi,
I merged multiple nanopore contigs using illumina data but I have some ambiguous bases and Ns and some gaps in the final contig. I want to circularize this final contig with the original nanopore…
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Dear Maria,
Thank you for generating nice service.
I tried to use Aseemblytics and found this service.
I am trying to compare BioNano and Hi-C (5 different version) by using nucmer and DOT.
Is …
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It looks like the SEQ and QUAL fields of the sam file are being concatenated in the nucmer output V4.0.0beta2
Also, is there a description of the delta file format out there?
thank you.
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I tried to run with two fly genomes, and after two days this software had not produced results. I am not sure how this program scales with genome size (or SNP density??). The multiple threads switch…
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Hello,
I'm trying to run centrifuge on a computer cluster, and it's failing with the message "(ERR): centrifuge-class died with signal 11 (SEGV) (core dumped)"
When I step through in the perl d…
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Hi,
I am using circlator in conda. When I run progcheck I get:
Circlator version: 1.5.5
External dependencies:
bwa 0.7.17 /Users/laura/miniconda3/envs/sanger/bin/bwa
WARNING: Didn't find ca…