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I am assembling a fungal mitochondrial contig in order to then test for heterogeneity. I already have a fully circularized mitochondrial genome from another assembler that is ~132,000 bp, but I want t…
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Hi,
I'm tring to test Deepvariant in my own panel data and set --regins to the interest regin, but something happend in my output. I provided reference gene hg19 and index it with samtools index, a…
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Hello Shujun,
I have been reading about the EDTA pipeline (the benchmarking paper and the supplementary methods). I have a few questions about the filtering steps. I am a bit confused by which filt…
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I downloaded TRF 4.09 from https://tandem.bu.edu/trf/trf.download.html. But I feel confused about what -trf represents. At first, I use a directory, it returned TRF directory is not valid and threw …
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I am trying to combine data from two PacBio runs: DNA (10kb) + cDNA (10kb), these regions overlap each other partially and I would like to phase them based on short-tandem repeats and exonic SNP/finge…
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### Is your feature request related to a problem? Please describe. For generic questions use Q&A section in the Discussions forum above.
Dear Mr/Mrs,
I am trying to combine data from two PacBio ru…
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Hi. I have a large reptilian genome that is fairly fragmented (stats below). It has been put through RepeatModeler once before successfully (Dec 2016). Now, I am trying to replicate a lot of the work …
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it would be quite good if there was a type (maybe let's call it `OffsetDateTime` to distinguish it from a possible `ZonedDateTime`) that can represent a `LocalDateTime` and ~~`TimeZone`~~ `ZoneOffset`…
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**Describe the issue**
I mask the simple repeat in some genome. I have tried to use larger memory and less thread, but not helpful.
**Reproduction steps**
1. Steps to reproduce the behavior…
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Hey, small question.
From what I've observed from the ZIP spec, it seems like the "directory hierarchy" of ZIP files are just an illusion, and that it's really just POSIX-style names (forward slash…