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Hi, I am trying to use Nanopore and some illumina reads from SRA database, I provided the fastq file from SRA its not working with the file, is there any way that can i use the fastq downloaded file f…
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Hi !
Thank you for snakemake,
I'm working on a project that aims to analyse big files (SRA files) and i want to store them in GCP buckets.
I'm working on a Google cloud plateform Virtual mac…
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Code:
```
from biokbase.narrative.jobs.appmanager import AppManager
AppManager().run_app(
"kb_uploadmethods/import_fastq_sra_as_reads_from_staging",
{
"import_type": "SRA",
…
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# SRA 빠르게 다운로드 받는 법
Download SRA with kingfisher-download and IBM aspera
[https://blog.hyunwoo.info/how-to-download-sra-quickly](https://blog.hyunwoo.info/how-to-download-sra-quickly)
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- the travis-ci link (links to https://travis-ci.com/sras/elminator which is a 404 for me, on [line 9](https://github.com/sras/elminator/blob/9a1344c531b75fbc6d4e96049fc8514a23fc0032/README.md?plain=1…
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Hi devlopers of Dorado,
First, thank you for providing this great software.
I noticed that after issue #532 , `RG` tag and some other tag is automatically added to the FASTQ header, which I …
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Hello,
I have also been researching the GSE139136 scATAC-seq data recently. However, after downloading the files from SRA and running fastq-dump, I only obtained the paired-end sequencing files SRR…
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### Description of feature
Hi,
In SRA some of the run accessions have no associated files.
For example bioproject [`PRJEB18755`](https://www.ncbi.nlm.nih.gov/Traces/study/?query_key=1&WebEnv=MC…
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Hello Guys,
You're project seems super nice, especially the viz parts that retain lot of my attention, and you seems to do a very great job however i'm struggling to setup the project being on MacOS …
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