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Hello,
Question about 'RNA sequencing assay' (OBI:0001177) and 'RNA-seq assay' (OBI:0001271). In OBI, 'RNA-seq assay' is a subclass of 'RNA sequencing assay'. Are there examples of assays that fal…
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Many lines are missing and some canonical genes now are classified as "RNA".
- AGAT version (v1.4.0)
- AGAT installation/use [Conda]
- OS: [Ubuntu]
I wanted to fix the gtf file that I received…
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Hello,
i would like to propose a new term dpCoA-cap decapping
Definition : Cleavage of the dpCoA-cap of an RNA
It should be the child term of GO:0110154 RNA decapping
References are PubMed=3237486…
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A number of assays were approved for submission and now have EFO terms, so they can be included in census_accepted_assays & the data can be included in Census
term_id | label
-- | --
EFO:0022600 | …
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Could add a mapping of Ensembl transcript IDs to NCBI RefSeq ID(s?).
In the Perl API:
```
my @dbentries = @{ $transcript->get_all_DBEntries() };
```
On the db entry: `dbname()` to get the name …
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I have been using funannotate to annotate fish genomes for a while. We found that funannotate performs very well when ISO-seq data are available (final busco > 98.5%), but doesn't work as well when on…
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20% estimated national seroprevalence means that lots of people have some amount of immunity!
Vaccine rollouts add to this.
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I want to propose to move out the GFF3 and FASTA loaders (and perhaps) others into a `tripal_genome` extension module. This way, core Tripal really is just core code. We could even fold in the Inter…
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Do this in beta 7.0.8:
- load a GRN from the database
- uncheck node coloring
- recheck nod coloring--the checkbox gets checked and the node coloring comes back in the display, but the options don'…
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Hi, I was wondering if there might be an easy way to return the time derivatives for the model / sample, or if I will have to modify the existing code to return this info. Cheers!