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I have a problem after using building kraken2 database. I have tried built both standard and custom database with archaea and bacteria library but both process I haven't get any of these three files. …
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moved to https://github.com/CRISPRScreens/FunGI/issues/9
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Running this query against KGX2 (what genes are downregulated by Gefitanib?)
```{
"edges": {
"e00": {
"predicates": ["biolink:entity_negatively_regulates_entity"],
"object": "…
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Hey @allind
I tried to install eukdetect but when I run this command:
conda env update --name Eukdetect -f environment.yml
it gave an error saying:
SpecNotFound: Invalid name, try the format: us…
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From our proteomic data, we saw that in the mycetoma grain woronin bodies and trehalose are important. The woronin body is ascomycete (fungal) specific and trehalose is found in invertebrates, plants,…
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**Are you using the latest release?**
Version 1.8.14
**Describe the bug**
Running the tutorial for genome+RNAseq with our own data, we successfully get through most of the annotation stages.
…
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Hi,
I'm trying to build a custom database for Fungi. I download the taxonomy and the library. And using the command:
kraken2-build --build --db fungi_refseq200731/ --threads 18
I get the follow…
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Don't bullshit, don't talk back to me, don't understand.
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https://cirosantilli.com/china-dictatorship/meant-to-be-used
https://cirosantilli.com/china-dictatorship/i-like-my-dictatorship
https://cirosantilli.com/china-dictatorship/nazi
https://cirosa…