-
It seems that S:F456L is very convergent in JN.1 now. (**last complete update June 19**)
- [*] Branch 1: JN.1.1.2+S:F456L, #1147 DEAD
- [*] Branch 2: JN.1.1+C9142T+S:F456L, #1249 DEAD
- [x] Bran…
-
**Describe the issue:**
DV calls two adjacent SNPs rather than one larger variant - eventho these variants are on the same reads.
The DV call looks as follows:
`chr17 63951760 . …
-
Lims Issue
---------------
For definitions of headings below see [Basic Concepts](https://atlas.scilifelab.se/infrastructure/lims/basic_concepts/).
**Work Flow:** RNA v4
**Protocol:** Initial …
-
Hi,
I am trying to test running hisat-genotype with some of my Illumina Whole Genome Seuquencing data.
I slightly modified the setup script (described [here](https://github.com/cwarden45/DTC_Scr…
-
asking for a friend
Could you please let me know if I could run the dada2 workflow for Sanger sequencing or nanopore sequencing?
Thanks
-
Hi Philippe and extended editorial board,
here comes the abstract for UC30.recipe1 on the publicly available FASTQ specifications:
[**Ingredient description: understanding FASTQ format and its…
-
Less of an issue and more of a question but i'm struggling to understand the scale of the sequencing error variable. As an example you use Pacbio reads which use `-E 0.10` but Pacbio reads have an ave…
-
Thank you for providing dysgu such a good tool~~~
I have 8 samples with a sequencing depth of 45X, the first 7 samples ran successfully, but the last one encountered an issue. I attempted to re-ru…
-
When specifying a input path, the path given to multiple steps of your script is only the filename which break the code cause it cant find the file in the adapt_find dir
[Errno 2] No such file or dir…
-
Hi,
I have PacBio reads of an organism called Henneguya salminicola. I am using Canu to assemble its genome which is ~70 m.
This is my command:
module load canu/canu-2.2
canu \
-p HSA_DNA_1 …