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### Description of feature
I suggest to add a process that checks Illumina Samplesheets for consistency before starting bclconvert/bcl2fastq. This ensures that errors are caught early with useful err…
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Hi,
@pb-jlandolin
I download some test data from the ncbi, as the sra-tools do not provide a "pacbio-dump" like fastq-dump or illumina-dump, I used the commod "fastq-dump --table SEQUENCE *.sra" . But…
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Hello George,
Thanks for this nice piece of software.
I have to assemble the genome of a single symbiotic bacterium from bivalve gills. Symbiont DNA prevails, but there's also some minor share of ot…
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`pipelines/broad/dna_seq/germline/single_sample/wgs/WGSFromBam.wdl` has an `input_cram` parameter, but trying to use a CRAM input results in this error:
```
Exception in thread "main" htsjdk.samto…
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https://ena-docs.readthedocs.io/en/latest/submit/reads/webin-cli.html has an example for submitting a pair of FASTQ files:
```
STUDY TODO
SAMPLE TODO
NAME TODO
INSTRUMENT Illumina Genome Analyz…
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These channel branding "bug" overlays on so many YouTube videos can be just as distracting as they've been on televisions for years now: http://www.illumina.net/default.htm
See screenshot, from SNL'…
Fofer updated
9 years ago
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Hi,
I ran hybrid assembly and under the "Assembling contigs and long reads with miniasm" process I got the error message "Speicherzugriffsfehler (Speicherabzug geschrieben)", I think in English it …
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${CORE_PATH}/${PROJECT}/${FASTQ}/${PLATFORM_UNIT}_ILLUMINA_STUFF.fastq.gz
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Hi @boehmv,
I would like to comment and document on expanding the number of datasets. So far, I have processed data for phases 1 and 2 (all the cell types). These were systematically analyzed. The …
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hi,The default genomic version seems to be hg19, is there any other way to analyze it using hg38?