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Dear @torognes, are you planning to add the sintax classifier http://biorxiv.org/content/early/2016/09/09/074161?
Thank you,
Davide
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## Expected Behavior
## Current Behavior
When using the ProstT5 model and --gpu 1 I get the error:
Error loading ProstT5: DriverError(CUDA_ERROR_INVALID_PTX, "a PTX JIT compilation failed") when…
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Especially with low-input non-human samples, a useful QC step would be to screen for unexpected species (e.g. human, ecoli)
- https://github.com/csawye01/nf-core-demultiplex/blob/d336df6dc08caed44…
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Hello, professor
I want to generate Haplotype-resolved assembly using hifiasm. Now, I have HiFi data, HiC data and parental illumina data, How do I use these data ? I try to use hifiasm but there are…
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In the article, PhenotypeSeeker is described as a tool for bacterial genome analysis. How do you think, could in be used for eukaryotes?
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Hi,
I was doing some triobinning , and noticed hap1 had 0 reads while hap2 had the vast majority. As it turned out, the estimated informative k-mer peak for hap1 was at 1018, while for hap2 it was 5.…
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Hey, thanks for your work.
I'm kinda lost. I'm using meryl to k-mers from my reads on a cluster and I'm not sure if it's correct, because it gave an log entry that only occurs when there is an error,…
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Hello,
first of all, thank you for giving us KMC and kmc_tools, which I use frequently.
I have both second-generation sequencing data in fq.gz files and third-generation data in .bam files. How sh…
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Hi team,
Thanks for the tool.
I successfully installed it and ran index and view on the test dataset provided.
Then, I moved into using my own data, a set of 12 turtles.
I successfully ran the…
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Hi Derrick,
We talked about this topic during 2014 and I know you are working on it. I'm very excited to see you released a new kraken version! I really think kraken could be one of the best solution…