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### Is your feature related to a problem?
Hello,
We are starting with the study of resistance genes, and we are using EPI2ME Desktop and we were very happy because it provided a lot of information v…
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Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns – Casper Sahl Poulsen – Microbiology Spectrum
https://journals.asm.org/doi/…
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Hello,
I'm struggling installing AMRFinder in my institution. It keeps failing because it cannot find the ftp site:
```
amrfinder_update --database /home/bioinf/bioinf_archive/98_mökiDatabase…
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**Project description**
A tool that identifies AMR genes, resistance-associated point mutations, and select other classes of genes using protein annotations and/or assembled nucleotide sequences.
…
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From the wiki:
```
3. gene | 1=gene, 0=non-coding (same as metadata column 2)
4. var_only | 1=variant only, 0=presence/absence (same as metadata column 3)
```
From my understanding, if the '…
ghost updated
3 years ago
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Hi everybody,
I am doing a functional metagenomic study. I did the annotation of protein sequences using HMMER against the Resfam database.
I mean I have a list of predicted resistance genes from …
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Hi,
I am developing a module for genotyping antimicrobial resistance. I noticed that the Bio.pairwise2 module has been deprecated, so I wanted to switch to Bio.Align.PairwiseAligner. I couldn't fin…
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ESKAPE pathogens found in https://www.nature.com/articles/s41597-022-01463-7
Datasets for benchmarking antimicrobial resistance genes in bacterial metagenomic and whole genome sequencing
https:/…
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Hello
I try to update the ncbi database in abricate using :
abricate-get_db --db ncbi --force
but there is a one error that still appears like 'Can't read TSV file'
On the other hand, I manag…
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2016/08/01 Diane Inglis commented on issue #149:
Hello Debby,
I am systematically browsing all the branches and want to comment on the way "OMP:0000274 ! antimicrobial agent resistance phenotype" in…