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cell type corresponding to several types of operation can give specific examples of operation examples, as well as application scenarios.
![QQ_1725446331716](https://github.com/user-attachments/asset…
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# Cell vs Relationship Module
Formerly known as the Cell Types module, we are revamping this component to feature both cells (nodes) and relationships (edges). We need:
- Option to see listing of re…
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hi, this is a great paper and awesome CellTypist models, thanks for this!
I'm seeking for metadata that actually describes the Seurat objects you provide with the supplementary - in all the objects…
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Hi,
I am trying to check markers for a list and it seems like the cell type information is not being used for some reason.
Total_nominated is close to the whole cell count in the cds instead of …
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**From:** Dimitri Traenkner
**Email:** dimitri.trankner@gmail.com
**Server IP:** 10.142.0.16
**Msg:** Hello, I understand how I can check cell types for the expression of single or few genes. How d…
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There are many types of fenestrated endothelial cell, but we only have a couple of classes under this term ('fenestrated cell' ; CL_0000666 )
Some examples + papers to curate:
https://www.perplex…
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The basic idea: to differentiate between closely-related cell types, we should re-run insitutype using only relevant genes, not the whole panel.
Rough workflow:
1. run insitutype under whatever w…
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Hello,
The data fetched using the ZilionisLungData() function includes cells with the label "ND" as one of the "major cell types". Does anyone know what this means?
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Hi authors,
Compliments for the great tool!
Reading the paper in which you present MD-ALL I focused on the deconvolution of bulk RNAseq data using CIBERSORTx and a custom single cell reference.
I u…
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Hi there,
I'm just wondering if you had tables of cell type calls for each species corresponding to the counts matrices you have on GEO somewhere.
Awesome work! thanks!
Matthew