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We'd like to know how big of a rescaling factor do we need to run simulations of Drosophila (under the [Sheehan & Song demographic model](https://stdpopsim.readthedocs.io/en/latest/catalog.html#sec_ca…
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- _Drosophila melanogaster_ is an interesting subject for test data since
- the genome is small (±180Mb)
- there are only 4 chromosomes (can expect 6 chromosome arms after scaffolding because t…
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For `Drosophila suzukii` and `Meloidogyne artiellia`, pathway information is `contaminant` (see [these lines](https://github.com/trias-project/ad-hoc-checklist/blob/cb63ddad1c9bd537326d292e9d29a95bd3…
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Hi @hattrill
Can you provide PMIDs (or other sources) for the following fly terms? These links are dead.
- [ ] GO:0045498 | sex comb development | The process whose specific outcome is the …
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We need to build a new container for earl grey following the instructions on their git.
When running it with tobybaril/earlgrey_dfam3.7:latest , it does not have some of the packages needed fo…
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Hi developers,
Thanks a lot for providing a powerful tool to analyze spike-in chip-seq data. In your paper, I noticed that you always use only one antibody (such as histone modification), however, …
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Hello! I have enjoyed using ENCODExplorer but I would like to query for Drosophila melanogaster. I tried using the organism, assembly, and biosample_type. Do you support other organisms besides Homo s…
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Hi,
Thanks for a great program, could you help me debug an issue I am having?
I am running from the docker container (tobybaril/earlgrey_dfam3.7:latest), and it almost completes, but dies with …
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* **Guidelines**
See http://wiki.geneontology.org/index.php/Guidelines_for_GO_textual_definitions#Use_genus-differentia_patterns_for_definitions
More details at https://douroucouli.wordpress.com/201…
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Has anyone successfully run star-fusion on drosophila samples? I've tried to create the requisite genomes both with the current singularity star fusion release (1.12) and the older 1.9 versions using…