-
I am wondering if this tool works with genes with ENSEMBL IDs
-
I made a strange observation. When I see the PlasmoDB gene Database, I see that there are `5254` genes but when using Biomart, I get only `4903` genes. Various characterized genes such as `"PBANKA_010…
-
User submitted a request to Ronna:
I’m running into a weird issue across a few vestibular datasets, where there are two Ensembl IDs for “Nrxn2”. This is an issue for the utricular datasets I was ho…
-
For example: [HERC2P9](https://platform.opentargets.org/search?q=herc2%20pseudogene%209&page=1&entities=target) or [AKAP17A](https://platform.opentargets.org/search?q=AKAP17A&page=1&entities=target) a…
-
### Description of feature
Dear all
I just found out that in commit https://github.com/nf-core/scrnaseq/commit/aae5fc5f618d1a4ccd40428d14050d838876f7fe we moved away from having ensembl_gene_ids a…
-
**Describe the issue**
I am running the latest version of kb_python to reproduce the example pipeline in the BIVI paper (which was using an older version of kb_python). I generated the loom successf…
-
My dataset is annotated with human ENSEMBL IDs rather than gene symbols. I see in the human database, you have annotated gene symbols with ENSEMBL IDs.
Is it possible to use ENSEMBL IDs with CellC…
-
Nodenorm includes yeast genes. For these genes, it looks like we have ncbigene, SGD, UniProt and PR, but for some reason, not ensembl.
We're bringing in ensembl genes, so why not yeasts?
-
- [x] The process of adding nodes is slow, we should figure out what part is slow (i.e. adding edges, getting current positions etc). There might also be a built-in delay in the addCyNodes function. -…
-
Hello
I am trying to find the annotation that was used for the 24Q2 release. Can you please let me know what Ensembl/Gencode release did you use? Also some of the files (e..g, the copy number datas…