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### Operating System
Ubuntu 22.04
### Other Linux
_No response_
### Workflow Version
All workflows
### Workflow Execution
EPI2ME Desktop (Local)
### Other workflow execution
_No response_
##…
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https://github.com/torognes/vsearch/blob/e79adfd5c77e4a18c218b5aafa430344127e4a9f/src/vsearch.cc#L4744
what happens to reads with a q20 score when i set fastq_max to 90?
using this command
v…
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As a user assigned to the pipeline FASTQ,
I want one case per sample,
So that the order-view in Trailblazer would tell me if a sample failed on amount of reads.
# Acceptance Criteria
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Hello,
Thank you so much for developing this awesome tool!
I am trying to simulate reads by running this script on hpc but kept getting the error below. I thought it was a resource issue so I in…
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## Expected Result
Starting an analysis from FASTQ files and a BAM file generated from these FASTQ files should produce the same result.
## Actual Result
A small fraction of reads is displaye…
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### Description of the bug
I know it is still work in progress, but the new version of this pipeline `https://github.com/nf-core/rnavar/tree/dev` seems really promising. However, it only takes the fi…
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I noticed if the input FASTQ set does not include all the tags listed in the config file, then the the `tag_qc` object in summary JSON file (i.e. the one generated by `-s`) will not terminate properly…
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The traceback:
```
Error in py_call_impl(callable, call_args$unnamed, call_args$named) :
FileNotFoundError: [Errno 2] No such file or directory: '/home/rstudio/workspace//data/SspArc0008_10x_c…
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Hello fastqwiper maintainers,
I'm encountering an issue while using fastqwiper to process a damaged fastq.gz file. Here are the details of the problem:
I am attempting to process a fastq.gz fi…
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Hi, very nice tool and nice addition with the --info flag. I'd like to ask you if it would be possible to also output the primer name (e.g,. the aux info) to each classified read name instead of the i…