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For mammals, fasta here is HIFI data, so ref.fasta should be telomere data. What format should it be?
>telomere_forward
TTAGGG
>telomere_reverse
CCCTAA
Still only
>telomere_forward
TTAGGG
#!…
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In the `feature_hic_scaffolding` branch many processes are requesting >20 cpus when using the Uppmax profile. This causes an error and nextflow exits the pipeline.
This happened with FASTK_FASTK (r…
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Hi all,
I am assembling a genome for a bird (estimated genome size 1.15 Gbp). I already have a VGP-quality assembly I generated combining HiFi and HiC (assembly and phasing with Hifiasm, scaffoldin…
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Hi!
I'm the beginner,I only have Ultralong_ONT dataset,could Hifiasm help me to assemble these reads?or could you help me recommend other software that could solve the problem?Thanks!!
 and when I compare the reads before and after correction, by aligning them on the reference assembly, the result is very convincing (very f…
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Hello!
I have encountered an error while running nucmer (most recent version) recently:
Here is the command used:
`nucmer -t 20 -p nucmer.hifiasm_hic_hap2_scaffolds_final_to_hifiasm_hic_hap1_sc…
fka21 updated
3 weeks ago
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Hi there,
I am using GenomeScope2 to check the heterozygosity rate of a plant genome (2n=28) with HiFi reads.
The initial assembly with Hifiasm was used for running a mummerplot with A. thalian…
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"I want to rerun hifiasm. How do I call the bin file? Should it be in the original directory? Could you provide some code, please? Thank you."
qinPX updated
2 months ago